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New Approaches of Protein Function Prediction from Protein Interaction Networks

by Jingyu Hou

Computational methods for inferring protein function from interaction networks

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Paperback New English

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AlbakiReads Editorial

Computational methods for inferring protein function from interaction networks

Jingyu Hou examines protein function prediction through protein-protein interaction (PPI) networks, a computational response to the cost and practical limits of experimental annotation. The book maps the main stages involved in building such predictions: evaluating the reliability of PPI data semantically, comparing proteins by functional similarity, selecting prediction domains dynamically, and constructing prediction frameworks. Its subject sits at the intersection of applied mathematics, network-based computation, and biological research, with attention to how interaction data can support the annotation of proteins whose roles remain unknown.

Good fit for readers who enjoy

  • Researchers and students studying protein-protein interaction networks
  • Bioinformatics readers interested in computational protein annotation
  • Applied mathematics readers working with biological network models

Themes

Protein function predictionProtein-protein interaction networksComputational biologyFunctional annotationData reliability and similarity measures

Based on publisher information and book metadata.

Book overview

New Approaches of Protein Function Prediction from Protein Interaction Networks contains the critical aspects of PPI network based protein function prediction, including semantically assessing the reliability of PPI data, measuring the functional similarity between proteins, dynamically selecting prediction domains, predicting functions, and establishing corresponding prediction frameworks.

Functional annotation of proteins is vital to biological and clinical research and other applications due to the important roles proteins play in various biological processes. Although the functions of some proteins have been annotated via biological experiments, there are still many proteins whose functions are yet to be annotated due to the limitations of existing methods and the high cost of experiments. To overcome experimental limitations, this book helps users understand the computational approaches that have been rapidly developed for protein function prediction.

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